The paper, which is freely available, describes the package and the data it wraps in detail. Rather than rehash the information here, we will use this post to briefly introduce the goals of the package and thank some of the people that helped it come to be.
What Data Does Open Tree Have and How Can rotl Help You Get It?
The Open Tree of Life combines knowledge from thousands of scientific studies to produce a single source of information about the relationships among all species on earth. In addition to storing the trees and taxonomies that go into this project, the Open Tree provides a “synthesis tree” that represents this combined knowledge. The Open Tree data can be accessed via the web page linked above, and through an API. rotl takes advantage of this API to give R users the ability to search for phylogenetic information and import the results into their R sessions. The imported data can then be used with the growing ecosystem of packages for phylogenetic and comparative biology in R. Continue reading →
On Friday, we gave some more information about the research articles in this Virtual Issue. In this post, we will be focusing on the Applications papers.
Applications papers introduce new tools for research, which provide practitioners with an important source of information and background on the tools they use. In this Virtual Issue we have highlighted the newest Applications papers that describe how phylogenetic methods are contributing to the fields of ecology and evolution. These include tools with aims as diverse as phylogenetic tree reconstruction and analysing phylogenetic diversity in communities. All Applications papers, not just those in the Virtual Issue, are free to access.
You can see a little more information on each of the Applications Papers below.