Journal updates

Double anonymous peer review frequently asked questions

Like many of the other British Ecological Society journals, MEE has recently transitioned to a double anonymous peer review model. This decision was made after the results of a recent study conducted from 2019-2022 on the Journal of Functional Ecology. Below are some frequently asked questions to help with the preparation of your submission to Methods in Ecology and Evolution. Can I publish a preprint … Continue reading Double anonymous peer review frequently asked questions

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Code and Applications

Testing Evolutionary Ecological and Community Ecological Outcomes with Matrix Projection Using R Package adapt3

Post provided by Richard P. Shefferson, University of Tokyo Matrix projection has become widely used by population ecologists to analyze and predict the behavior of wild populations of plants and animals… and sometimes even other, odder organisms (Salguero-Gómez et al. 2015; Salguero‐Gómez et al. 2016). Over the last few decades, the size and complexity of these models have increased dramatically, with matrix dimensions now ranging … Continue reading Testing Evolutionary Ecological and Community Ecological Outcomes with Matrix Projection Using R Package adapt3

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Ecology

Can extinction risk be reliably estimated even with limited data?

Post provided by Hiroshi Hakoyama. Rethinking extinction probability as a conservation endpoint Thinking about conservation in terms of species extinction as an endpoint underpins how priorities are set in the IUCN Red List and CITES. At their core, these frameworks are about deciding which populations or taxa should be prioritised for conservation effort. Yet Population Viability Analysis (PVA), which aims to quantify extinction probability itself, … Continue reading Can extinction risk be reliably estimated even with limited data?

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Ecology, Lab Methods, Methods papers

A longer read on microbes: Why bigger fragments matter in Earth’s harshest habitats

Post provided by Xi Peng When I first started analysing metagenomic data from cold seeps and hot springs, I didn’t expect to spend quite so much time staring at confusing lines of code and fragmented sequences. Yet these digital traces—broken fragments of DNA scattered across a matrix of microbial complexity—hold the fingerprints of life in Earth’s most extreme habitats. In this work, we developed an … Continue reading A longer read on microbes: Why bigger fragments matter in Earth’s harshest habitats

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Journal updates, Peer Review

How to avoid a desk-rejection because your manuscript is the wrong type

Post provided by Dr. Aaron M. Ellison, Executive Editor at Methods in Ecology and Evolution You’ve worked for months, sometimes years, on developing and testing a new method, and spent a similar amount of time writing the manuscript. It’s finally finished and after navigating the online submission system and uploading and proofing your files, you press the “submit my manuscript” button. Back in the Dark … Continue reading How to avoid a desk-rejection because your manuscript is the wrong type

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What is series

What is acoustic spatial capture-recapture (aSCR)?

Post provided by Ané Cloete What is acoustic spatial capture-recapture (aSCR)? Estimating how many animals live in a given area is one of the most fundamental challenges in conservation. For species that are easy to see such as large mammals on open plains, for example, this is manageable. But for cryptic species that hide from view, counting them directly is often impossible. This is where … Continue reading What is acoustic spatial capture-recapture (aSCR)?

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Conferences and Meetings

Organising the BES Data and Code Hackathon

Post provided by Natalie Cooper, MEE Senior Editor In my last blog post I wrote generally about why and how to organise a hackathon. To help make those instructions a little clearer, below I provide an example from the BES Data and Code Hackathon we ran 29th-30th September 2025. Note that technically this was really a datathon rather than a hackathon! We followed the outline … Continue reading Organising the BES Data and Code Hackathon

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Conferences and Meetings

The What, Why and How of Hackathons

Post provided by Natalie Cooper, MEE Senior Editor In September 2025 we ran a hackathon to collect data for a paper on data- and code-sharing across the BES journals. After the event, we thought it might be nice to share what we learned about hackathons here on the MEE blog. Massive thanks to all the participants of the BES Data and Code Hackathon for their … Continue reading The What, Why and How of Hackathons

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Practical Tools

The future of natural history specimen 3D digitization is here with COPIS

Post provided by Jeremy D. Pustilnik and Genevieve S. Rios Natural history museums around the world collectively hold over one billion specimens in their collections, from animal skins and fossils to pressed plants, minerals, and cultural heritage artifacts. Only a small fraction of these objects is ever placed on public display, while most remain in collection cabinets where they are studied by scientists, but rarely … Continue reading The future of natural history specimen 3D digitization is here with COPIS

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Ecology, Practical Tools

What a national marine dataset taught us about the power of quality control and collaboration

Post provided by Brooke Bond (Gibbons) Ecologists often dream about big datasets—Combining observations from multiple studies across space and time could reveal patterns that would otherwise be impossible to detect. But anyone who has tried to merge datasets from different sources knows the reality is often less glamorous. My first job involved synthesising Baited Remote Underwater Video (BRUV) datasets from across Australia. BRUV systems use … Continue reading What a national marine dataset taught us about the power of quality control and collaboration

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Ecology

Building the Infrastructure for Reproducible Biodiversity Science

BIEN 4.2: A Reproducible Standard for Global Plant Biodiversity Data Post provided by the BIEN Working Group For hundreds of years, biologists have carefully collected information on plants, animals, and other organisms and have created and maintained enormous libraries of physical specimens from all around the globe. Specimens are collected with all kinds of information– often there’s a physical example, but beyond that, scientists record … Continue reading Building the Infrastructure for Reproducible Biodiversity Science

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