Data manipulation and statistical analysis in palaeoecology: an unexpected journey

Post provided by Midori Yajima

Picture credit: Midori Yajima

Midori Yajima graduated from an MSc in Ecology with a project on palaeoecology and decided to join the online workshop Data Manipulation and Statistical Analysis in Palaeoecology: A Masterclass in R, set up by the Palaeoecology Special Interest Group (PalaeoSIG). In this post, Midori discusses some highlights from the workshop and emphasises the importance of a research community when navigating the programming realm.

Continue reading “Data manipulation and statistical analysis in palaeoecology: an unexpected journey”

Towards a More Reproducible Ecology

The following post has been provided by Dr Nick Isaac.

Nick is organising the OpenData and Reproducibility Workshop at Charles Darwin House, London on 21 April 2015 (more information below). He is also an Associate Editor for Methods in Ecology and Evolution.

Macro_finalThe open science movement has been a major force for change in how research is conducted and communicated. Reproducibility lies at the heart of the open science agenda. It’s a broad topic, covering how data are shared, interpreted and reported.

Reproducibility has been advanced by a coalition of publishers (who have been embarrassed by a series of high-profile retractions), funding agencies keen that data should be re-useable after the life of a grant, and young researchers taking a more collaborative attitude than previous generations.

There is now a vast range of tools and platforms to help scientists share data and other materials (e.g. Dryad, Github, Figshare) and to create efficient and reproducible workflows (e.g. Sweave, Markdown, Git and, of course, R). There’s even a MOOC (Massive Open Online Course) in Reproducible Research, run out of Johns Hopkins University.

Ecology has lagged behind wet-lab biology and other disciplines in the adoption of reproducibility concepts and there are few examples of ecological studies that are truly reproducible. To address this, we’re running a one-day workshop at Charles Darwin House, London on Tuesday 21 April entitled OpenData & Reproducibility Workshop: the Good Scientist in the Open Science era. Continue reading “Towards a More Reproducible Ecology”