Category: Methods papers

General, Journal updates, Methods papers, Online extras, Statistical methods

boral: R package for multivariate data analysis in Ecology

In this video Francis Hui introduces boral, a new R package he developed for Bayesian analysis of multivariate data in ecology. It uses Bayesian MCMC estimation to fit latent variable models for unconstrained ordination (read the MEE paper, Model-based approaches to unconstrained ordination, for details), and for multi-species inference while accounting for inter-species correlation: Download boral from CRAN Read the MEE paper Model-based approaches to … Continue reading boral: R package for multivariate data analysis in Ecology

Unknown's avatarSamantha Ponton1 Comment
General, Journal updates, Methods papers

Issue 5.10

Issue 5.10 is now online! This month we include 4 freely available application articles: – agTrend: A Bayesian approach for estimating trends of aggregated abundance – MEMGENE: Spatial pattern detection in genetic distance data – mizer: an R package for multispecies, trait-based and community size spectrum ecological modelling – PyRate: a new program to estimate speciation and extinction rates from – incomplete fossil data We … Continue reading Issue 5.10

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General, Journal updates, Methods papers, Online extras, Society, Virtual Issues

Open Access Week 2014

Once more Open Access Week has rolled around. At MEE we operate a hybrid model: although we are a subscription journal, authors can choose to make their papers open access (for a price – sorry). Over the past year, 21 papers have been published as open access (listed here). They span the range of topics we cover, including citizen science, using cell phones, and asking … Continue reading Open Access Week 2014

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Conservation and management, General, Methods papers, Practical Tools

Noisy SCUBA bubbles scare fish(shh!)

A new Methods paper comparing SCUBA diving to bubble-free diving suggests that fish are deterred by the sound of SCUBA bubbles, particularly in heavily fished areas, which can result in potentially biased fish counts and research conclusions. Steven Lindfield and colleagues from the University of Western Australia studied coral reef fish populations in Guam using two diving systems: the commonly used SCUBA equipment that produces … Continue reading Noisy SCUBA bubbles scare fish(shh!)

Unknown's avatarSamantha PontonLeave a comment
General, Journal updates, Methods papers

Issue 5.9

Issue 5.9 is now available online, including articles on telemetry and sensors, markers and sequences, modelling and model assessment, and extending current data. In addition there are 2 freely available applications: MeCa, a toolbox for the calculation of metabolism in heterogeneous streams and Rphylip: an R interface for PHYLIP About the cover: This month we have a Cape gannet (Morus capensis) at its nest on … Continue reading Issue 5.9

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General, Journal updates, Methods papers

Issue 5.8

Issue 5.8 includes articles on lidar & radar in ecology, occurrence data analysis, ecological networks, measuring habitats, life history variation, dispersal, biodiversity–productivity and monitoring populations, along with the freely available application article: ‘a simple numerical tool to infer whether a species is extinct‘. There’s an associated video this month in which Phillip Stepanian and colleagues talk about the background and motivation behind their paper: ‘an introduction … Continue reading Issue 5.8

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General, Journal updates, Methods papers, Online extras, Virtual Issues

Ecology in China

At MEE we are looking to publish the best methodological papers. It is no surprise, then, that we are able to contribute several papers to this ‘Ecology in China’ Virtual Issue. The topics covered range from an elegant new way of using very old technology (Zhao et al.) to methods based on next generation sequencing to investigate biodiversity (for example Liu et al.). It is … Continue reading Ecology in China

Unknown's avatarSamantha Ponton1 Comment
General, Journal updates, Methods papers, Online extras, Practical Tools

Kinect connects for mangroves research

Here is a video and press release about the recent Methods paper, ‘Investigating three-dimensional meso-scale habitat complexity and its ecological implications using low-cost RGB-D sensor technology‘, taken from Griffith University:


Motion sensing technology, best known in computer games, is vastly improving Queensland scientists’ ability to quantify habitat complexity in mangroves.

The Kinect line of devices developed by Microsoft for Xbox consoles and Windows PCs is marrying gaming technology with ecological research to deliver precise three-dimensional data in greater efficiency and at a fraction of the cost of current imaging techniques.

At Griffith University’s Australian Rivers Institute (ARI) on the Gold Coast, Professor Joe Lee, Dr Jan Warnken and Higher Degree Research student Ms Shafagh Kamal have been Continue reading “Kinect connects for mangroves research”

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General, Journal updates, Methods papers

Issue 5.7

Issue 5.7 is now available online, including papers on population ecology, landscape ecology, spatial ecology, community ecology and environmental ecology. This month there is a forum discussion by Murray Efford and Andy Royle, about the 2013 paper Integrating resource selection information with spatial capture–recapture. There are 2 open access papers on particle size distribution and optimal capture of aqueous macrobial eDNA, and measuring convergent evolution, … Continue reading Issue 5.7

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General, Journal updates, Methods papers, Online extras, Statistical methods, Virtual Issues

Ecological statistics are methods too!

Methods in Ecology and Evolution has been publishing papers on statistical ecology since its inception in 2010. Since the last ISEC meeting, we have published many more papers, of an increasing quality and influence. We have put together a Virtual Issue to showcase some of those papers (but it also misses out many more that will be just as interesting)!. The papers chosen show the … Continue reading Ecological statistics are methods too!

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