Forking anatomy: borrowing software’s best idea to build 3D atlases together

Post provided by A. Murat Maga Picture a graduate student who has just spent eighty hours tracing the individual bones of a fish skull, slice by slice, through a high-resolution microCT scan. The result is a beautiful, richly labelled 3D dataset. And then? Too often it lands on a hard drive, or gets flattened into a static 3D model that no one else can edit, … Continue reading Forking anatomy: borrowing software’s best idea to build 3D atlases together

The need to quantify complex shapes

Robert May Prize Shortlisted Article

Post provided by Arthur Porto

Credit: Kjetil Voje

Each year Methods in Ecology and Evolution awards the Robert May Prize to the best paper in the journal by an author at the start of their career. Arthur Porto has been shortlisted for his article ‘ML‐morph: A fast, accurate and general approach for automated detection and landmarking of biological structures in images’. In this blog, Arthur discusses how his paper came to be and describes development of the ML-morph pipeline.

Continue reading “The need to quantify complex shapes”