Associate Editor Profile: LOUISE JOHNSON

Dr Louise Johnson, a population geneticist working on the evolution of genetic systems, has been an Associate Editor for Methods in Ecology and Evolution since October 2013. In that time she has handled a range of manuscripts falling within her areas of expertise (primarily molecular evolution, population genetics and genomes).

Louise Johnson
Dr Louise Johnson

Louise began her academic career with a degree in Genetics at the University of Edinburgh. She then moved south to complete her PhD on the evolution of mating systems in yeast at Imperial College London under the supervision of Professor Austin Burt. Following her successful time in London, she took up post-doctorate positions at the University of Nottingham (working on transposable elements with Professor John Brookfield) and across the Atlantic at the University of Virginia (looking at genome defences with Professor Janis Antonovics and Professor Michael Hood). Louise returned to the UK in 2006 to take up an RCUK Fellowship at the University of Reading and has been there ever since.

As part of our series of Editor Profiles, we asked Louise to tell us about some of her current research:

There are three projects which I am currently working on that I would like to outline. I’ll be discussing the cancer project – or at least the story so far – at the Methods in Ecology and Evolution 5th Anniversary Symposium later this month. Do check out the programme, and I hope to see you there! The whole point of a methods journal is to help each other do our research as well and easily as possible, so there’s a built-in community spirit about MEE, which bodes well for a fun and useful meeting. Before I start I should also say that I’m lucky to have amazing collaborators at Reading and beyond: for the projects below, credit is particularly due to my colleagues Rob Jackson and Tiffany Taylor, who had a huge input, and to Mike Brockhurst at York. Continue reading “Associate Editor Profile: LOUISE JOHNSON”

Towards a More Reproducible Ecology

The following post has been provided by Dr Nick Isaac.

Nick is organising the OpenData and Reproducibility Workshop at Charles Darwin House, London on 21 April 2015 (more information below). He is also an Associate Editor for Methods in Ecology and Evolution.

Macro_finalThe open science movement has been a major force for change in how research is conducted and communicated. Reproducibility lies at the heart of the open science agenda. It’s a broad topic, covering how data are shared, interpreted and reported.

Reproducibility has been advanced by a coalition of publishers (who have been embarrassed by a series of high-profile retractions), funding agencies keen that data should be re-useable after the life of a grant, and young researchers taking a more collaborative attitude than previous generations.

There is now a vast range of tools and platforms to help scientists share data and other materials (e.g. Dryad, Github, Figshare) and to create efficient and reproducible workflows (e.g. Sweave, Markdown, Git and, of course, R). There’s even a MOOC (Massive Open Online Course) in Reproducible Research, run out of Johns Hopkins University.

Ecology has lagged behind wet-lab biology and other disciplines in the adoption of reproducibility concepts and there are few examples of ecological studies that are truly reproducible. To address this, we’re running a one-day workshop at Charles Darwin House, London on Tuesday 21 April entitled OpenData & Reproducibility Workshop: the Good Scientist in the Open Science era. Continue reading “Towards a More Reproducible Ecology”

Issue 6.3

Issue 6.3 is now online!

The March issue of Methods is now online!

We have three freely available Applications articles in this issue. Anyone can access these with no subscription required and no charge to download.

TR8: This R package was built to provide plant scientists with a simple tool for retrieving plant functional traits from freely accessible online traitbases.

StereoMorph: A new R package for the rapid and accurate collection of 3D landmarks and curves using two standard digital cameras.

MotionMeerkat: A new standalone program that identifies motion events from a video stream. This tool reduces the time needed to review videos and accommodates a variety of inputs.

This month we have a total of FIVE Open Access articles. That makes eight articles in this issue of Methods in Ecology and Evolution that you can read for free!

Continue reading “Issue 6.3”

Our 5th Anniversary Symposium

Charles Darwin House, London, UK: 10:00 – 18:00 (GMT) Alberta Room, Dining Centre, University of Calgary, Canada: 08:30 – 17:00 (MST) 22 April 2015 Methods in Ecology and Evolution, the British Ecological Society’s youngest journal, turns five this year. To celebrate we will be holding a joint Symposium – beginning in the UK and concluding in Canada. We will be hearing what’s in store for … Continue reading Our 5th Anniversary Symposium

Flawed Method puts Tiger Rise in Doubt

The following is a press release about the Methods paper ‘An examination of index-calibration experiments: counting tigers at macroecological scales‘ taken from the University of Oxford News and Events page:

Flaws in a method commonly used in censuses of tigers and other rare wildlife put the accuracy of such surveys in doubt, a new study suggests.

A team of scientists from theNH_QT_K2934024 University of Oxford, Indian Statistical Institute, and Wildlife Conservation Society exposes, for the first time, inherent shortcomings in the ‘index-calibration’ method that means it can produce inaccurate results. Amongst recent studies thought to be based on this method is India’s national tiger survey (January 2015) which claimed a surprising but welcome 30 percent rise in tiger numbers in just four years.

The team urges conservation practitioners to guard against these sources of error, which could mislead even the best conservation efforts, and suggests a constructive way forward using alternative methods of counting rare animals that avoid the pitfalls of the index-calibration approach.

A report of the research is published this week in the journal Methods in Ecology and Evolution.

Continue reading “Flawed Method puts Tiger Rise in Doubt”

Issue 6.2

Issue 6.2 is now online! The February issue of Methods is now online! This month we have two applications articles. Both are free to access, no subscription required. – NLMpy: A PYTHON software package for the creation of neutral landscape models (there are also two videos associated to this paper on our Youtube channel) – BAT – an R package for the measurement and estimation of … Continue reading Issue 6.2

Issue 6.1

Issue 6.1 is now online! Our first issue of 2015 is now online! This month we include one freely available Applications article: – A biochemical approach for identifying plastics exposure in live wildlife We also have two wonderful Open Access papers, ‘Evaluation and management implications of uncertainty in a multispecies size-structured model of population and community responses to fishing‘ by Robert B. Thorpe, Will J. … Continue reading Issue 6.1

Measuring the importance of species to ecosystems

In this video to accompany their paper Randomization tests for quantifying species importance to ecosystem function, authors Nicholas Gotelli and Fernando Maestre discuss the introduction of simple tests for measuring the effect of species on ecosystem variables, and give us an insight into the logistics required for their paper’s “natural experiements” – involving the collection and preparation of over 25,000 lichen samples! The methodology presented in this paper … Continue reading Measuring the importance of species to ecosystems

Studying deepwater animals with TrapCam

Two uploads in two days make this a bumper week for Methods in Ecology and Evolution‘s author videos! In Studying deepwater animals with TrapCam lead author Brett Favaro walks us through the construction of TrapCam, an inexpensive, self-contained camera system designed to deliver high-definition video footage of deepwater animals at depths inaccessible for scuba divers, which does not require ongoing support from a vessel, or … Continue reading Studying deepwater animals with TrapCam

Watch the CEE meeting, Integrating ecology into macroevolutionary research

By way of an introduction to this blog post, watch this! Back in March the Centre for Ecology and Evolution in London organised a meeting that brought together top researchers in macroevolution. The idea of the meeting was to highlight how advances in the study of macroevolution could be made by a closer integration with ecology, and the incoroporation of ecological ideas and ecological models. … Continue reading Watch the CEE meeting, Integrating ecology into macroevolutionary research