Issue 11.4: Population Dynamics, Machine Learning, Morphometrics and More

The April issue of Methods is now online!

The latest issue of Methods in Ecology and Evolution is now online! This month’s issue is a little shorter than our last few. But, as they say, good things come in small packages!

Senior Editor Lee Hsiang Liow has selected six Featured Articles this month. You can find out about all of them below. We’ve also got five Applications articles and a Practical Tools article in the April issue that we’re going to cover. Those six papers are freely available to everyone – no subscription required!

On top of all that, the April issue includes articles on camera traps, land cover classification, presence-absence sampling and more.

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Researchers Use Drones to Weigh Whales

Below is a press release about the Methods in Ecology and Evolution article ‘Estimating body mass of free‐living whales using aerial photogrammetry and 3D volumetrics‘ taken from the British Ecological Society.

A southern right whale female rolling on her side and exposing her lateral side to the surface while gently touching her calf. ©Fredrik Christiansen

Researchers have devised a way to accurately estimate the weight of free-living whales using only aerial images taken by drones. By measuring the body length, width and height of free-living southern right whales photographed by drones, researchers were able to develop a model that accurately calculated the body volume and mass of the whales.

Because of their large size and aquatic life, previously the only way to obtain data on the body mass of whales was to weigh dead or stranded individuals.

The innovative method can be used to learn more about the physiology and ecology of whales. “Knowing the body mass of free-living whales opens up new avenues of research. We will now be able to look at the growth of known aged individuals to calculate their body mass increase over time and the energy requirements for growth. We will also be able to look at the daily energy requirements of whales and calculate how much prey they need to consume.” said Assistant Professor Fredrik Christiansen from Aarhus Institute of Advanced Studies in Denmark and lead author of the study. Continue reading

Issue 7.10

Issue 7.10 is now online!

The October issue of Methods is now online!

This month’s issue contains three Applications articles and two Open Access articles, all of which are freely available.

– CODYN: New analytical tools applied to long-term data demonstrate that ecological communities are highly dynamic over time. The R package, library(“codyn”), helps ecologists implement these tools and gain insi–ghts into ecological community dynamics.

– Geometric Morphometrics: A tool for the R statistical environment that optimises the smoothing procedure for 3D surfaces used in Geometric Morphometrics.

– TRAPPER: Open source, multi-user software that facilitates analysis of videos and images, provides spatial filtering and web-mapping, allows flexible implementation of specific data collection protocols, and supports data re-use and (re)discovery.

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Issue 7.5

Issue 7.5 is now online!

The May issue of Methods is now online!

This month’s issue contains two Applications articles and two Open Access articles, all of which are freely available.

piecewiseSEM: A practical implementation of confirmatory path analysis for the R programming language. This package extends the method to all current (generalized) linear, (phylogenetic) least-square, and mixed effects models, relying on familiar R syntax. The article also includes two worked examples.

 RPANDA: An R package that implements model-free and model-based phylogenetic comparative methods for macroevolutionary analyses. It can be used to:

  1. Characterize phylogenetic trees by plotting their spectral density profiles
  2. Compare trees and cluster them according to their similarities
  3. Identify and plot distinct branching patterns within trees
  4. Compare the fit of alternative diversification models to phylogenetic trees
  5. Estimate rates of speciation and extinction
  6. Estimate and plot how these rates have varied with time and environmental variables
  7. Deduce and plot estimates of species richness through geological time. Continue reading