The babette R Package: How to Sooth the Phylogenetic BEAST2

Post provided by Richel Bilderbeek

 What is babette?

‘babette‘ is an R package that works with the popular phylogenetic tool BEAST2. BEAST2 uses one or more alignments and a model setup to create a Bayesian posterior of jointly estimated model parameters and phylogenies.

babette lets you call BEAST2 from an R script. This makes it easier to explore models and/or alignments than using the graphical user interface programs that BEAST2 provides. It will also help you to improve the reproducibility of your work with BEAST2.

babette Tutorial Videos

If you’re new to phylogentic analyses, the video ‘babette demo‘ demonstrates the package. It has all of the information that you need to be able to start using the package

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Choosing Where to Submit: Is Your Manuscript Right for MEE?

You’ve spent months, or even years, working on a project. You’ve finalised your manuscript and you’re ready to submit. But which journal should you send your paper to?

@ Colin (click image to see original)

@ Colin (click image to see original)

In recent years, this question has only gotten harder. As more and more journals enter the market, the decision of where to send your paper is becoming increasingly confusing. With predatory journals muddying the waters and an increasing pressure to publish, deciding where to submit can be a daunting task for even seasoned academics.

Is Methods in Ecology and Evolution the right journal for your manuscript? Is your manuscript right for Methods? Hopefully this blog post will give you a set of tools to make that decision a little easier. Most of these can be applied to other journals too (although some may need to be tweaked a little). Continue reading