Spatial thinning and class balancing: Key choices lead to variation in the performance of species distribution models with citizen science data

Post provided by Valerie Steen

Each year Methods in Ecology and Evolution awards the Robert May Prize to the best paper published in the journal by an author at the start of their career. Ten Early Career Researchers made the shortlist for this year’s prize, including Valerie Steen who is a Postdoctoral Researcher at Oregon State University in the USA. In this interview, Valerie shares insights on her paper ‘Spatial thinning and class balancing: Key choices lead to variation in the performance of species distribution models with citizen science data’.

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Cover Stories: Cleaning up false positives with minimum sequence copy thresholds

Post provided by Jordan Cuff and Lorna Drake

Photo credit: Alan Seymour.

The cover of our March issue shows a female Eurasian otter (Lutra lutra), with its young kit bringing a crab to shore before eating it. The photographer, Alan Seymour, had been watching the otter from a distance, while laying low behind a large boulder. Direct observations of trophic interactions take a lot of time and skill, especially concerning cryptic species (e.g., semi-aquatic mammals, small invertebrates). Accurately and precisely identifying prey items is mostly impossible by observation. Molecular methods, such as DNA metabarcoding, offer a sensitive approach for investigating trophic interactions of cryptic species; however, this high sensitivity can introduce errors. In this post, the authors discuss potential sources of errors in dietary metabarcoding datasets, and how to use minimum sequence copy thresholds to carefully remove them, detailed in their Methods in Ecology and Evolution article “An assessment of minimum sequence copy thresholds for identifying and reducing the prevalence of artefacts in dietary metabarcoding data”.

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February Issue Out Now

Our February issue is now online! Our second issue of the year contains 22 high-quality articles about the latest methods in ecology and evolution. This month we have methods for visualising the tree of life, estimating arthropod abundance and diversity, disentangling effects of climate and land use on biodiversity and much more! This issue also contains four Applications and two Practical Tools articles that are free to … Continue reading February Issue Out Now

plantR: Managing species records from biological collections

Post provided by Renato Lima

Many biodiversity studies, covering a wide range of goals, need species records. These records are becoming readily available online, however there is minimal standardisation for these records at this stage, therefore requiring final users to spend a significant amount of time formatting records prior to using data. To overcome this, Renato Lima et al. have created plantR – an open-source package that provides a comprehensive toolbox to manage species records from biological collections. In this blog post, Renato discusses the workflow of the package and describes how this package can help researchers better assess data quality and avoid data leakage.

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Why are some mammals black and white? 

Natasha Howell of Bristol University unearths the mystery of striking colouration in mammals and what skunks and bees have in common. This blog is part of our colourful countdown to the holiday season where we’re celebrating the diversity and beauty of the natural world. Click here to read the rest of the colour countdown series. The vast majority of mammal species are not known for their striking colouration. Compared to other … Continue reading Why are some mammals black and white? 

How do birds see the world? 

Almut Kelber, Professor at Lund University, takes us on a sweeping tour of the complex array of bird vision – from chickens to owls – to unravel how their ecology affects the way they see the world. This blog is part of our colourful countdown to the holiday season in which we’re celebrating the diversity and beauty of the natural world. Click here to read the rest of … Continue reading How do birds see the world? 

October Issue Out Now!

Our October Issue is out now! It’s a bumper issue, with 26 articles presenting the latest methods in ecology and evolution. We have methods for measuring temporal change in alpha diversity, aerial imaging of field plots, analysing 3D morphology images and more, plus four Applications and five Practical Tools articles for your reading. Find out more below! Featured Articles The potential and practice of arboreal … Continue reading October Issue Out Now!

A framework for unifying disturbance ecology

Post provided by: Brian Buma

In this post, Brian Buma discusses a unifying framework for studying disturbance ecology, from largescale wildfires to bacterial colonies, as proposed in the new paper “Disturbance ecology and the problem of n = 1: A proposed framework for unifying disturbance ecology studies to address theory across multiple ecological systems” recently published in Methods in Ecology and Evolution.

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The worldwide use of wildlife detection dogs – and how they became part of our life

Post provided by Annegret Grimm-Seyfarth

Border Collie Zammy is trained to search for Eurasian otter scat and pond, alpine and great crested newts. Photo: André Künzelmann.

For those not directly working with them, using wildlife detection dogs always sound like a new fancy idea that should be tested somehow. However, this method is neither new nor rare, and people working with wildlife detection dogs often call them their best method in finding their target species. In this post, Annegret Grimm-Seyfarth discusses her paper ‘Detection dogs in nature conservation: A database on their worldwide deployment with a review on breeds used and their performance compared to other methods’, which shows the broad and worldwide applications of wildlife detection dogs.

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10th Anniversary Volume 7: eDNA Editor’s Choice

To celebrate our 10th Anniversary, we are highlighting a key article from each of our volumes. For Volume 7 we selected ‘The ecologist’s field guide to sequence‐based identification of biodiversity’ by Creer et al. (2016).

In this post, two of our Associate Editors with expertise in eDNA, Lynsey Harper and Chloe Robinson, select their favourite MEE papers in this field.

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