2019 Robert May Early Career Researcher Prize Shortlist

Posted on February 27, 2020 by India Stephenson

Each year Methods in Ecology and Evolution awards the Robert May Prize to the best paper in the journal by an author at the start of their career. Today we present the shortlisted papers for 2019’s award, based on articles published in volume 10 of the journal.

The winner will be chosen by the journal’s Senior Editors in a few weeks. Keep an eye on the blog for the announcement.

This year’s shortlisted candidates are:

Extracting individual trees from lidar point clouds using treeseg – Andrew Burt

A quantitative framework for investigating the reliability of empirical network construction – Alyssa R. Cirtwill

A novel biomechanical approach for animal behaviour recognition using accelerometers – Pritish Chakravarty

Anacapa Toolkit: An environmental DNA toolkit for processing multilocus metabarcode datasets – Emily E. Curd

MistNet: Measuring historical bird migration in the US using archived weather radar data and convolutional neural networks – Tsung‐Yu Lin

Using quantum dots as pollen labels to track the fates of individual pollen grains – Corneile Minnaar

Untangling direct species associations from indirect mediator species effects with graphical models – Gordana C. Popovic

Matrix methods for stochastic dynamic programming in ecology and evolutionary biology – Jody R. Reimer

Current and emerging statistical techniques for aquatic telemetry data: A guide to analysing spatially discrete animal detections – Kim Whoriskey

Over the next month or so, we’ll be finding out more about these articles. You’ll be able to keep up to date with all of the Robert May Prize news here.

Methods behind the Madness: Ecology at the Poles

Posted on January 28, 2020 by Dr. Chloe Robinson

Post provided by Chloe Robinson, Crystal Sobel and Valerie Levesque-Beaudin

*Aurora Borealis* in the polar north. Photo: Noel Bauza, Pixabay

For those of us in the Northern Hemisphere, the coldest months of the year are upon us. A combination of post-holiday ‘blues’ and the cold, dark mornings make the daily trudge to work all that less inspiring. Recent snow storms in locations such as Newfoundland (Canada), have made it nearly impossible for many people to leave their homes, let alone commute to work. Now cast your mind to a little over 2,000 km north of Newfoundland and imagine the challenges faced with carrying out a job during the coldest, darkest months of the year.

As with every other biome on the planet, polar biomes contain a variety of different species, from bugs to baleen whales. To better understand the different species at our poles, scientists need to collect ecological data, but this is far from a walk in the park.

Iceberg in the Gerlache Strait, Antarctica. Photo: Liam Quinn, flikr.

With the year 2020 marking 200 years since the discovery of Antarctica and the Centenary of ‘vital’ Scott Polar Research Institute (Cambridge, UK), we wanted to highlight some of the polar research published in the journal, featuring challenges faced and current research being undertaken at the poles.

Continue reading →

Ten Years of Methods in Ecology and Evolution

Posted on January 15, 2020 by India Stephenson

Our first cover (left) and most recent cover (right).

Methods in Ecology and Evolution is turning 10 years old! Back in 2010, we launched the journal because of feedback from the community that there was a need for a journal that promoted the publication of new methods. Founding Editor Rob Freckleton and Graziella Iossa (now a member of the Editorial Board) summarised the aims and ambitions for the journal in the first issue. They explained why a new journal was needed, as well as some of the objectives and strategies for developing it.

At the time a lot of the progress in ecology and evolutionary biology was being driven by methodological developments in statistics, computing, molecular and genetic techniques. So it seemed logical to propose a journal that concentrated on methodological development. The community needed a specific place to publish methods articles and we wanted to provide one.

As we enter the second decade of Methods in Ecology and Evolution, it seems like a good time to look back and see whether we’ve met that aim. And that’s exactly what Rob Freckleton, Aaron Ellison, Lee Hsiang Liow and Bob O’Hara (regular readers will recognise these as our Executive and Senior Editors) have done in their Editorial: ‘Ten Years of Methods in Ecology and Evolution‘.

The Editorial is freely available to everyone – no subscription required (just like the rest of our January issue). We’ll be celebrating our 10th anniversary all year, so keep an eye out here on the blog and at conferences!

Thank You to All of Our Reviewers: Peer Review Week 2019

Posted on September 20, 2019 by India Stephenson

As many of you will already know, this week is Peer Review Week (16-20 September). Peer Review Week is a global event celebrating the vital work that is done by reviewers in all disciplines. Throughout the week, we’ve been looking back at some of the peer review advice and guidance that we’ve published on the blog.

The theme for this year’s Peer Review Week is quality in review. So we thought that the best way to end the week would be to thank to everyone who has reviewed for us. Without the hard work and expertise of the people who voluntarily review papers for us, Methods in Ecology and Evolution would not be the successful journal that it is today. We are incredibly grateful for all of the time and effort that reviewers put into reading and commenting on the manuscripts that we send to them.

We’d like to send a HUGE THANK YOU to everyone who has ever reviewed for Methods in Ecology and Evolution – whether you’ve worked on one paper or twenty – we really appreciate your time and effort.

You can see the names of everyone who has reviewed for us so far in 2019 on our website.

The Self-Preserving eDNA Filter: How It Works and Why You Should Use It

Posted on July 11, 2019 by India Stephenson

Researchers at Washington State University and Smith-Root recently invented an environmental DNA (eDNA) filter housing that automatically preserves captured eDNA by desiccation. This eliminates the need for filter handling in the field and/or liquid DNA preservatives. The new material is also biodegradable, helping to reduce long-lasting plastic waste associated with eDNA sampling.

This video explains their new innovation in the field of eDNA sampling technology:

To find out more about the self-preserving eDNA filter, read the full, Open Access Methods in Ecology and Evolution article ‘A self‐preserving, partially biodegradable eDNA filter‘
(No Subscription Required).

If you’re using interesting new field techniques like this, why not submit a Practical Tools manuscript about them? You can find out more about Practical Tools manuscripts here.

Animal Social Networks: Joint Special Feature Open Call

Posted on March 26, 2019 by India Stephenson

Zebras and giraffes walking. Photo by Kirsty Lucas.

The recent focus on the study of animal social networks has led to some fundamental new insights. These have spanned across fields in ecology and evolution, ranging from epidemiology and learning through to evolution and conservation. Whilst network analysis has been used to address questions about sociality, food webs, bipartite networks and more over the past decade it is now extending into a wider variety of fields such as network interconnection and the link between gene networks and the expression of adaptive behaviours.

Graph theoreticians and biologists also are continuously developing novel network analytical approaches, opening new avenues of study and thereby extending our knowledge on many biological aspects of animal behaviour and interactions. This synergy between the development of new techniques and their application within a wider diversity of disciplines and animal models is providing a solid framework for studying animal sociality. However, as with all new research directions, growing knowledge has come with many new questions and new analytical challenges.

Here at Methods in Ecology & Evolution and the Journal of Animal Ecology we are excited by the new directions that the next decade of research into animal social networks will bring. We hope to encourage new advances in the study of animal social networks by calling for high-quality papers for a cross-journal Special Feature on animal social networks. The aim of this Special Feature is to bring together researchers from different fields and working with a diversity of biological models to showcase new network techniques and how they are integrated into general analytical frameworks.

The Special Feature is intended to provide the readership with a cross-disciplinary overview of state-of-the-art tools for network analyses in animal research and promote their application and new development for the decades to come. It was proposed by Sebastian Sosa, Mathieu Lihoreau, David Jacoby and Cédric Sueur.

Social network visualization. Photo by Martin Grandjean CC-SA.

We are soliciting original research capturing novel methodological developments or applications of social network theory to new empirical questions. These papers should address outstanding questions in fields that include (but are not restricted to) evolutionary ecology, behavioural ecology, disease and parasite biology, wildlife conservation, and theory.

Joint Special Feature Details

Manuscripts should be submitted in the usual way through the Journal of Animal Ecology or Methods in Ecology and Evolution websites. Submissions should clearly state in the cover letter accompanying the submission that you wish the manuscript to be considered for publication as part of this Special Feature. Pre-submission enquiries are not necessary, but any questions can be directed to: admin@journalofanimalecology.org or coordinator@methodsinecologyandevolution.org

The deadline for submission is: ~~Monday 26 August~~.

The NEW submission deadline is: Friday 27 September

Damien Farine and the Guest Editors have reviewed some areas of animal social network research that deserve particular attention.

R-Ladies: For More Balance in the R Community!

Posted on March 8, 2019 by India Stephenson

The theme for this year’s International Women’s Day is #BalanceForBetter. So, we decided that we’d like to take this opportunity to promote an organisation that supports and empowers women and gender minorities in STEM fields that still suffer from underrepresentation. As a journal, we publish a lot of articles on software and code that are used in the study of different fields in ecology and evolutionary biology. We have a wide audience of R coders and R users who follow us on social media and read our blog. With that in mind, R-Ladies seemed like a fairly obvious group for us to promote…

Post provided by MAËLLE SALMON and HANNAH FRICK, two members of the R-LADIES GLOBAL TEAM.

What is R-Ladies?

R-Ladies is a global grassroots organisation whose aim is to promote gender diversity in the R community. The R community suffers from an underrepresentation of gender minorities (including but not limited to cis/trans women, trans men, non-binary, genderqueer, agender). This can be seen in every role and area of participation: leaders, package developers, conference speakers, conference participants, educators, users (see recent stats). What a waste of talent!

As a diversity initiative, the mission of R-Ladies is to achieve proportionate representation by encouraging, inspiring, and empowering people of genders currently underrepresented in the R community. So our primary focus is on supporting minority gender R enthusiasts to achieve their programming potential. We’re doing this by building a collaborative global network of R leaders, mentors, learners, and developers to help and encourage individual and collective progress worldwide. Continue reading →

Methods in Temporal Ecology

Posted on December 20, 2018 by India Stephenson

Post provided by Althea L. Davies & M. Jane Bunting

This post presents our reflections from two sessions at the first British Ecological Society Annual Meeting since the Palaeoecology Special Interest Group (SIG) was formed. Did the term “palaeoecology” make you want to stop reading? Then you’re not alone – our field of ecology seems to have drifted apart from neoecology over the last couple decades. We seem to have been separated by our choice of methods, rather than brought together by the fascinating, complex and essential challenges of better understanding ecosystem function that we share.

The diversity of talks at BES 2018 showed that ecologists working on time scales beyond the scope of direct study are researching the same urgent, exciting questions as other flavours of ecology. And that they are doing it by using an ever-growing range of methods and technologies. The Thematic Session ‘Advancing Our Understanding of Long-Term Ecology’ showcased advances in studies of long-term ecology. The Palaeoecology Oral Session demonstrated the diversity within this field. We don’t have room to mention all presenters, so we’d like to highlight contributions from two speakers in each session which demonstrate how strong the shared ground between palaeoecology and neoecology is. Continue reading →

How to Assemble, Fill and Clean Metapopulation Microcosm Plates: Two Video Tutorials

Posted on November 30, 2018 by India Stephenson

Metapopulation Microcosm Plates (MMP) are devices which resemble 96-well microtiter plates in size and shape, but with corridors connecting the wells in any configuration desired. They can be used to culture microbial metapopulations or metacommunities with up to 96 habitat patches.

In these two video tutorials, Helen Kurkjian explains how you can assemble, fill and clean MMPs in your lab.

Continue reading →

Spatial Capture-Recapture: The Pros and Cons of Aggregating Detections

Posted on September 25, 2018 by India Stephenson

Post provided by Cyril Milleret

Spatial Capture-Recapture and Computation Time

SCR models simultaneously estimate the detection function and density of individual activity centres. A half-normal detection model is generally used.

The estimation of population size is one of the primary goals and challenges in wildlife ecology. Within the last decade and a half, a new class of tools has emerged, allowing us to estimate abundance and other key population parameters in specific areas. So-called spatial capture-recapture (SCR) models are growing in popularity not only because they can map abundance, but also because they can be fitted to data collected from a variety of monitoring methods. For example, the ever increasing use of non-invasive monitoring methods, such as camera trapping and non-invasive genetic-sampling, is one of the reason that makes SCR models so popular.

One other strengths of SCR models is the ability to make population level inferences. But the wider the region you’re monitoring, the greater the computational burden, challenging the use of such methods at really large scale. Continue reading →

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